Cluster Software
Self-Managed
Pre-Installed scientific software
- 4ti2
- AFNI (Analysis of Functional NeuroImages)
- AlphaFold
- AlphaFold3 Module
- Ansys Fluent
- Blender
- Bohra
- CCP4
- ChimeraX
- CLC genomics Workbench
- ColabFold
- Connectome Workbench
- CRYSTAL23
- DeepLabCut
- DeepPoseKit
- Dorado
- Example SLURM batch script
- EcoAssist
- EPI2ME Desktop
- Fiji
- FSL
- GLOBEClaritas
- Gaussian
- GRASS GIS
- Gubbins
- Guppy (GPU)
- ilastik
- Jupyter Lab
- Kilosort4
- Macaulay2
- Mathematica
- MATLAB
- MELTS
- NetLogo
- Nextflow
- Ollama
- OpenPose
- ORCA
- PyTorch via module
- QGIS
- RStudio Server
- SAGA GIS
- SaTScan
- Specify
- Stata
- Using Stata on the Cluster
- Steps to Request a License
- Setting Up the License File
- Notes
- Samtools
- Space Ranger
- UGENE
- Whisper (speech-to-text)
- XDSGUI