Koch
- Introduction
- Getting access
- Spack
- Software
- Anaconda
- BEAST2
- bedtools2
- bioperl
- BLAST+
- Bowtie2
- Circlator
- Clustalw
- Conda
- Diamond
- Entrez Direct
- FastTree
- FastQC
- Flye
- Guppy
- HMMER
- Jupyter
- Kraken2
- Medaka
- MetaPhlAn
- muscle
- Miniconda
- minimap2
- Nanopolish
- Nullarbor
- PhyloPhlAn
- Prokka
- Python
- QIIME 2
- R
- RAxML
- RFPlasmid
- RStudio
- SAMtools
- SPAdes
- SRA Tools
- TBProfiler
- Trinity
- Trycycler
- Unicycler
- USEARCH
- VSEARCH
- Storage
- Containers